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RLadyBug… more info»
This folder contains the data file for the simulation study of a 4x2 vaccination investigation mentioned in Section 4.3 "Application of results to control measures" of of the Hoehle et. al article. The files in the dir have been generated as follows: #Generate the data -- i.e. generate the trajectories of an epidemic #starting with an innoculation at time e0=0 in the 4x2 setup. #The results are the foobar.all and the foobar.data files ../../bin/simsellke.sh 4x2.data traj e0 #Calculate MLE in the 4x2 setup and compare with the true #values ../../bin/ladybug.sh foobar.data ml.sir #Possibly analyze the epidemic in R, i.e. you have to generate #the file foobar.all2 from the output after the statement #"After genXYZ in sampleState() function..." Rterm --vanilla < show.R ghostview foobar.ps #Now it would be nice to do the same with missing exposure times #however there appears to be a bug in the programm here.