pkg://amap-align_2.2-1_i386.deb:127424/control
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Package: amap-align
Version: 2.2-1
Architecture: i386
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 256
Depends: libc6 (>= 2.7-1), libgcc1 (>= 1:4.1.1-21), libstdc++6 (>= 4.2.1-4)
Conflicts: amap (<= 4.8-1)
Section: science
Priority: optional
Homepage: http://bio.math.berkeley.edu/amap/
Description: Protein multiple alignment by sequence annealing
AMAP is a command line tool to perform multiple alignment of peptidic
sequences. It utilizes posterior decoding, and a sequence-annealing
alignment, instead of the traditional progressive alignment method. It
is the only alignment program that allows to control the sensitivity /
specificity tradeoff. It is based on the ProbCons source code, but
uses alignment metric accuracy and eliminates the consistency
transformation.
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The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.