|File Search||Catalog||Content Search|
clustalo - General purpose multiple sequence alignment program for proteins… more info»
2011-09-07 Release 1.0.3 Bugs fixed: input failed if first line in fasta file was empty input failed if Clustal formatted file had trailing residue numbers '*' character was causing problems, did not get filtered out by squid --outfmt=fasta was not recognized '~' gap characters were not recognized in MSF format amended README re sequence/profile alignment disallowed empty sequences doxygen documentation fixes and fix of API example 2011-06-23 Release 1.0.2 2011-06-17 Release 1.0.0 (DeshilHollesEamus) 2010-06-17 Release 0.0.1 (Dubliniensis) First "release" as program has been able for a while to perform all basic tasks without problems. Non-standard features already built-in include: HMM-iteration (using HMMER for building an HMM) and guide-tree iteration. On top of that HMM input works fine and background-frequencies are added to the HHalign process. Known issues: RNA/DNA alignment is considered buggy. Aligned sequences have to be dealigned for HHalign to work properly. The HMMER version message can be ignored if no HMM-iteration was used.